rs27328955 SNP Detail

Summary

• ID
  rs27328955
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167618946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGGGCCCA CAGGTGGGAT TTTTGTTCTC CTTAAGCTTT
  TAAATACAGA ATTTACTTAA GTCAAAGTCA CTGAGCCAAG TCGGATCCAC CCGCAGCGAC
  S
  GGGATCCTGC CCCATCCTCT CCGCAGACAA ATACCACTGG TTTTAATCCT ATTTAACAAA
  CTAATGAGAT GTGAAAGAAA GTTGTGGGCT TGGGGACATG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507288	NES08842027	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328955					SNP	G	G	G	G	G	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507288	NES08842027	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167618946 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	438 bp upstream
Cpgi12755	CpG island 12755	407 bp proximal
Gm14321	predicted gene 14321	465 bp upstream
Gm32287	predicted gene, 32287	within coordinates
Rr56124	regulatory region 56124	1345 bp distal
Rr56125	regulatory region 56125	54 bp proximal
Tssr771	transcription start site region 771	1863 bp upstream
Tssr772	transcription start site region 772	1331 bp downstream
Tssr773	transcription start site region 773	261 bp downstream
Tssr774	transcription start site region 774	970 bp downstream
Tssr21849	transcription start site region 21849	1473 bp downstream
Tssr21850	transcription start site region 21850	449 bp upstream
Tssr21851	transcription start site region 21851	1066 bp upstream
Tssr21852	transcription start site region 21852	1131 bp upstream
Tssr27802	transcription start site region 27802	1839 bp upstream
Tssr27803	transcription start site region 27803	1810 bp upstream
Tssr27804	transcription start site region 27804	1625 bp upstream
Tssr27805	transcription start site region 27805	1547 bp upstream
Tssr27806	transcription start site region 27806	243 bp downstream
Tssr27807	transcription start site region 27807	872 bp downstream
Tssr27808	transcription start site region 27808	894 bp downstream