rs27328956 SNP Detail

Summary

• ID
  rs27328956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167617940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGGTCC TCTTGCTTGT
  GTGGCAAGCA CCATCTACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  TGCATGAACG CACAGGCGGG TAAAATATCC ATAAACAAAA AATAAAAATA AATCTGGAAA
  AAAACATTTT AAAGGACTAA AGGGAAAATA TTAAAAGAAA AAATTCTGAA GGGAAACGGA
  R
  GGTCTCGTCA GGAAAATGGA GAGTCTCCTC AGCCCTCAGC AGGAACAGTG TGGGGAGGGG
  GGATTTGGCT CTCTACAATT TTCATGGTTC CCAGCACCTT GTGACTGTGT CCAAACTCAG
  GTTCCTGTTC CGTTCCCAGC TTCTCTCACC TCAACCCAGC TAAATGATAT TCTTCTCCCA
  TGATTCCCTT TGCTGCCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507289	NES08842054	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328956					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507289	NES08842054	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167617940 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	1444 bp upstream
Cpgi12755	CpG island 12755	1413 bp proximal
Gm14321	predicted gene 14321	1471 bp upstream
Gm32287	predicted gene, 32287	within coordinates
Tssr771	transcription start site region 771	857 bp upstream
Tssr772	transcription start site region 772	325 bp downstream
Tssr773	transcription start site region 773	735 bp upstream
Tssr774	transcription start site region 774	1976 bp downstream
Tssr21849	transcription start site region 21849	467 bp downstream
Tssr21850	transcription start site region 21850	1455 bp upstream
Tssr27801	transcription start site region 27801	1051 bp upstream
Tssr27802	transcription start site region 27802	833 bp upstream
Tssr27803	transcription start site region 27803	804 bp upstream
Tssr27804	transcription start site region 27804	619 bp upstream
Tssr27805	transcription start site region 27805	541 bp upstream
Tssr27806	transcription start site region 27806	1249 bp downstream
Tssr27807	transcription start site region 27807	1878 bp downstream
Tssr27808	transcription start site region 27808	1900 bp downstream