rs27328957 SNP Detail

Summary

• ID
  rs27328957
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167617562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGCCACAT TCTACTTCTG TGAGTGTGCA TGAGTGCGCG
  CGCACGCGCG CACACACACA CACACACACA AACACACACA CACACACACA CACTCATGCA
  K
  GTTTCCTCAG GCACGACCAA CTTTCTGGGT TTGAGACACT TTCAAGACAC TTTCTCACCA
  AGTTGGCCAG CAATACCCAG AGATCTTCCT CAGCACGGGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507290	NES08842124	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328957					SNP	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507290	NES08842124	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167617562 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	1822 bp upstream
Cpgi12755	CpG island 12755	1791 bp proximal
Gm14321	predicted gene 14321	1849 bp upstream
Gm32287	predicted gene, 32287	within coordinates
Gm75068	predicted gene, 75068	1953 bp downstream
Rr56124	regulatory region 56124	within coordinates
Rr56125	regulatory region 56125	1438 bp proximal
Tssr771	transcription start site region 771	479 bp upstream
Tssr772	transcription start site region 772	28 bp upstream
Tssr773	transcription start site region 773	1113 bp upstream
Tssr21849	transcription start site region 21849	89 bp downstream
Tssr21850	transcription start site region 21850	1833 bp upstream
Tssr27801	transcription start site region 27801	673 bp upstream
Tssr27802	transcription start site region 27802	455 bp upstream
Tssr27803	transcription start site region 27803	426 bp upstream
Tssr27804	transcription start site region 27804	241 bp upstream
Tssr27805	transcription start site region 27805	163 bp upstream
Tssr27806	transcription start site region 27806	1627 bp downstream