rs27328958 SNP Detail

Summary

• ID
  rs27328958
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167616977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTGGTG GGGATGGTGG
  TGGGCTGAGA TTTAGCCAGA GCCTTGGGGC CCAGTGGGAG GCAGATCCAC ATCTGCTAGC
  AAGACGTGTC AGCCAGGCCT GTCACACTGT GGAGGCTCAT CCCTGAGGTA TGTGGGAGCT
  GGGAGGTGCC GCGGGGTGGG CGGGTGATGC TGTGGGGCGG AGCCAGCTGA GCTGCTGGGC
  K
  GCAAGGCTGC GTGCAGGTCC CAGGGACCCC AGCAATGATC CCTAACCTGC GAGTGGACCA
  AAGGGGTGGG GCTGGGGGAG GCAGAGGGCG GCAGGGTCTG CTCAGAGAGG CCTCAAACTC
  ACACCTTAAG AGGGTGTATC ATTTCAAGCA GTGTCATAAG GGAAGGCCTG GGCATGCACA
  GCTCCTGGAT GCCTCCCTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507291	NES08842123	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328958					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507291	NES08842123	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167616977 () rs orientation: forward

Symbol	Name	Function Class
Gm32287	predicted gene, 32287	within coordinates
Gm75068	predicted gene, 75068	1368 bp downstream
Rr56124	regulatory region 56124	223 bp proximal
Tssr770	transcription start site region 770	1923 bp downstream
Tssr771	transcription start site region 771	98 bp downstream
Tssr772	transcription start site region 772	613 bp upstream
Tssr773	transcription start site region 773	1698 bp upstream
Tssr21847	transcription start site region 21847	1898 bp downstream
Tssr21848	transcription start site region 21848	1865 bp downstream
Tssr21849	transcription start site region 21849	472 bp upstream
Tssr27801	transcription start site region 27801	88 bp upstream
Tssr27802	transcription start site region 27802	123 bp downstream
Tssr27803	transcription start site region 27803	147 bp downstream
Tssr27804	transcription start site region 27804	333 bp downstream
Tssr27805	transcription start site region 27805	410 bp downstream