rs27328959 SNP Detail

Summary

• ID
  rs27328959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167616819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGGATG ACTGGACCTC
  TTGAACCCTG GCCTGGTCTT GGCTGGGGCT TTGGATCCCT GAGCCTGTCT CTTGTCCCTC
  TGTCACCTAC AGGACCTGAA TGTGCTTCTG TGCCCAGACT TTATCGTAGC TCTGCCCCAC
  AGGGCCTGGG GCTGAGCCTG GGGTGGTGGG GATGGTGGTG GGCTGAGATT TAGCCAGAGC
  Y
  TTGGGGCCCA GTGGGAGGCA GATCCACATC TGCTAGCAAG ACGTGTCAGC CAGGCCTGTC
  ACACTGTGGA GGCTCATCCC TGAGGTATGT GGGAGCTGGG AGGTGCCGCG GGGTGGGCGG
  GTGATGCTGT GGGGCGGAGC CAGCTGAGCT GCTGGGCGGC AAGGCTGCGT GCAGGTCCCA
  GGGACCCCAG CAATGATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507292	NES08842122	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27328959					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507292	NES08842122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167616819 () rs orientation: forward

Symbol	Name	Function Class
Gm32287	predicted gene, 32287	within coordinates
Gm75068	predicted gene, 75068	1210 bp downstream
Tssr770	transcription start site region 770	1765 bp downstream
Tssr771	transcription start site region 771	256 bp downstream
Tssr772	transcription start site region 772	771 bp upstream
Tssr773	transcription start site region 773	1856 bp upstream
Tssr21847	transcription start site region 21847	1740 bp downstream
Tssr21848	transcription start site region 21848	1707 bp downstream
Tssr21849	transcription start site region 21849	630 bp upstream
Tssr27800	transcription start site region 27800	1847 bp upstream
Tssr27801	transcription start site region 27801	51 bp downstream
Tssr27802	transcription start site region 27802	281 bp downstream
Tssr27803	transcription start site region 27803	305 bp downstream
Tssr27804	transcription start site region 27804	491 bp downstream
Tssr27805	transcription start site region 27805	568 bp downstream