rs27329130 SNP Detail

Summary

• ID
  rs27329130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166839622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGTCTGC TGTAGCTAAA
  AAGACCCTCC TCTGACTTGC AGAGACACTG GGGGGCGCCT TTATCTGAAT TAAGTCTTCT
  TAGTTTGCTT TTTGTAAAAC CCAGTGACAC TGAGTTCCAG AACCAGCCGT TCCTTCCAGT
  TCCCAGCCAA CTCCGCTAAG TAAGCAACAC ATAGGCAGTT AGGGCAGTGA AGATGCCCAC
  Y
  GGGTAAAATG TGCGTATTTA CGCACAAAAT AATCAATTTT GGTGGGTTTG GGGTTTTTTT
  TGTTTGTTTG TTTTTTGTTT TTTGGGTTTT GTTTTGTTTG AAATGGGGTC TTACTATTTA
  GCTCTGGCTG GCCTCAAATT TGGAGAGATC AGAATACCTC TGCCTCCTGG GTGCTGGAAT
  TAAAGGTGTG TGCCACCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37509163	NES08848695	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329130					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37509163	NES08848695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166839622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	1081 bp distal
Rr40642	regulatory region 40642	22 bp distal
Rr40643	regulatory region 40643	779 bp proximal
Rr56101	regulatory region 56101	621 bp distal
Rr397498	regulatory region 397498	1137 bp downstream
Stau1	staufen double-stranded RNA binding protein 1	1403 bp upstream
Tssr27718	transcription start site region 27718	1593 bp upstream
Tssr27719	transcription start site region 27719	1544 bp upstream
Tssr27720	transcription start site region 27720	1482 bp upstream
Tssr27721	transcription start site region 27721	1446 bp upstream
Tssr27722	transcription start site region 27722	1419 bp upstream