rs27329132 SNP Detail

Summary

• ID
  rs27329132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166839514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCTGGA AACACAAACA
  AACAAACAAA TAAATAAATA AAAATAGCAT GCCTAACAGC CCAGTCTCCT TGCCAAGGCA
  CTGTGGCTGA CTTTGCATGA ATTCATGATG ACGTCTGCTG TAGCTAAAAA GACCCTCCTC
  TGACTTGCAG AGACACTGGG GGGCGCCTTT ATCTGAATTA AGTCTTCTTA GTTTGCTTTT
  Y
  GTAAAACCCA GTGACACTGA GTTCCAGAAC CAGCCGTTCC TTCCAGTTCC CAGCCAACTC
  CGCTAAGTAA GCAACACATA GGCAGTTAGG GCAGTGAAGA TGCCCACCGG GTAAAATGTG
  CGTATTTACG CACAAAATAA TCAATTTTGG TGGGTTTGGG GTTTTTTTTG TTTGTTTGTT
  TTTTGTTTTT TGGGTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37509165	NES08848693	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329132					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37509165	NES08848693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166839514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	973 bp distal
Rr40642	regulatory region 40642	within coordinates
Rr40643	regulatory region 40643	887 bp proximal
Rr56101	regulatory region 56101	513 bp distal
Rr397498	regulatory region 397498	1029 bp downstream
Stau1	staufen double-stranded RNA binding protein 1	1295 bp upstream
Tssr27718	transcription start site region 27718	1485 bp upstream
Tssr27719	transcription start site region 27719	1436 bp upstream
Tssr27720	transcription start site region 27720	1374 bp upstream
Tssr27721	transcription start site region 27721	1338 bp upstream
Tssr27722	transcription start site region 27722	1311 bp upstream