rs27329450 SNP Detail

Summary

• ID
  rs27329450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165316726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCTCTCT CTCTCCCTCT CTCTCATAAT AAAATAAAAG
  CTACACAAGA AAGAGAGGGG AAAAGGGAAG GGGGCAGAGA GAAAGGGAGG GACCACTGTG
  Y
  TAACGTCTCC CACAGTTCCA CTAACAAACT CCCATGGTTT TTATCACGGT TTCCTGATGG
  CAGTGTCCAT CTTAACCCTG GCTGTTTGGG AAGATCTCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37514175	NES08887088	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27329450					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514175	NES08887088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165316726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	1127 bp distal
Rr569927	regulatory region 569927	1685 bp distal
Rr569928	regulatory region 569928	1342 bp distal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	1609 bp upstream
Tssr27627	transcription start site region 27627	1604 bp upstream