rs27329454 SNP Detail

Summary

• ID
  rs27329454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165315931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCACATTC CCGCTAGCAG
  CTCATGGGGG CCCAGCTTCT CCACATCCTC CGTGGACTGC TGAGCAGTGA TGGATCAGCC
  GGACTCTTCT GTTTCCCAGA GATGCCTGGA AGGAACACAC GGCCTTGGCC ATGCAAAGCA
  GAAGGCACAA GGCCTGACTC TGCTTTCCGC CCTGAGTGGG TCCTCCACCC TCCTTGGGAT
  Y
  GCGACATGTT TCCCCACTGG CTACTGTCAA TGGGACCTTG TCCTGGCTCC TGGGGCCTGA
  GTGGTTTCTG TGGAGAAAGG GACTTGTTGG AAAGTTTCTT GGTTTTTGTC GTTTGGAGGA
  GGGGGCAGGG GGGGGTTGGT TCAGAACATT GCATACACAC AGCTTATAAT CTATGGGCAC
  TGCCATCTTA CCAGGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37514179	NES08887119	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27329454					SNP	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514179	NES08887119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165315931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	332 bp distal
Rr569926	regulatory region 569926	1738 bp distal
Rr569927	regulatory region 569927	890 bp distal
Rr569928	regulatory region 569928	547 bp distal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	814 bp upstream
Tssr27627	transcription start site region 27627	809 bp upstream