rs27329457 SNP Detail

Summary

• ID
  rs27329457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165315743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTGCAT CTCCCTATGC
  TGCTGAGGAC AACCTTGAAC TCCCATCCTC CTGCCACTAC TTTCTGAGGG TTGGCATTAT
  GGACGTGTGC CAACGCCCCT GGTTTCATAC GGGCAGCTGC TAAGTCAGCT TAAGATCCAA
  CCTCCACTAT TTTAAGAAAA TAGGGACTCT TTGGTCTTAC TCTGCACTAT TCACATTCCC
  R
  CTAGCAGCTC ATGGGGGCCC AGCTTCTCCA CATCCTCCGT GGACTGCTGA GCAGTGATGG
  ATCAGCCGGA CTCTTCTGTT TCCCAGAGAT GCCTGGAAGG AACACACGGC CTTGGCCATG
  CAAAGCAGAA GGCACAAGGC CTGACTCTGC TTTCCGCCCT GAGTGGGTCC TCCACCCTCC
  TTGGGATTGC GACATGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37514182	NES08887115	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329457					SNP	G	A	G	A	A	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514182	NES08887115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165315743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	144 bp distal
Rr569926	regulatory region 569926	1550 bp distal
Rr569927	regulatory region 569927	702 bp distal
Rr569928	regulatory region 569928	359 bp distal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	626 bp upstream
Tssr27627	transcription start site region 27627	621 bp upstream