rs27329459 SNP Detail

Summary

• ID
  rs27329459
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165315446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCGCCCC ACTCTGGACT
  CACGTGGGAA ATGGGGCAAA GCCCAGGTGG GACTAAAGGC CTCAGCACCG TCATCCCACT
  GTCCAACCCT GTAGGGACAG ACCAAGCTAC TGAGACCTCT AGTGACCGTG GTTGCAGCCT
  CTTCCAGACT TGGAGGTTGG TGGGGGGGTT TAAGTGAGAT AGTGCTTCGT GCAAAGGGCC
  S
  GGTCACCTGT GGGTAGGAGC TTTCCCTTCT CAGTGACAGA TGCCACAACC TGCTTGATAT
  TGTGTGTGTT GGGACAGGCT CTTATTTAGC CCAAGCTGGC CTGCATCTCC CTATGCTGCT
  GAGGACAACC TTGAACTCCC ATCCTCCTGC CACTACTTTC TGAGGGTTGG CATTATGGAC
  GTGTGCCAAC GCCCCTGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37514184	NES08887179	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	C	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329459					SNP	G	C	G	C	C	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514184	NES08887179	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165315446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	within coordinates
Rr569926	regulatory region 569926	1253 bp distal
Rr569927	regulatory region 569927	405 bp distal
Rr569928	regulatory region 569928	62 bp distal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	329 bp upstream
Tssr27627	transcription start site region 27627	324 bp upstream