rs27329462 SNP Detail

Summary

• ID
  rs27329462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165315314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCTCAG CGGCCGCCGG
  CAGGGACCTA AAGCCCCAAG GGACGGGGAG GAGCCATGCG GAACCGCCCC GGGCCGCGCC
  TCCTTGGTCT GGACAAGGAG CAGGGAAGGG GCCCCAGAGC ACCCCACCCG CCCCCGCGCC
  CCACTCTGGA CTCACGTGGG AAATGGGGCA AAGCCCAGGT GGGACTAAAG GCCTCAGCAC
  Y
  GTCATCCCAC TGTCCAACCC TGTAGGGACA GACCAAGCTA CTGAGACCTC TAGTGACCGT
  GGTTGCAGCC TCTTCCAGAC TTGGAGGTTG GTGGGGGGGT TTAAGTGAGA TAGTGCTTCG
  TGCAAAGGGC CGGGTCACCT GTGGGTAGGA GCTTTCCCTT CTCAGTGACA GATGCCACAA
  CCTGCTTGAT ATTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37514187	NES08887176	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	C	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329462					SNP	C	T	C	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514187	NES08887176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165315314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	within coordinates
Rr569926	regulatory region 569926	1121 bp distal
Rr569927	regulatory region 569927	273 bp distal
Rr569928	regulatory region 569928	within coordinates
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	197 bp upstream
Tssr27627	transcription start site region 27627	192 bp upstream