rs27329463 SNP Detail

Summary

• ID
  rs27329463
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165314832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCACCCA TTTAAGACAC
  CGACATAGAC TGATTCCTTT ATCTTCACCG TGAGCCTATG ATGCGTTATC ATATTCCCTC
  TTTCTGGGTA GGGGGTACGC AAACCAAAGT TCAGAGAGGT TAAGTGACTG GCGACAGGTC
  ACACAGTTGT TCTTCGGAAA GACTGTGAAG GGCTATATAC CCCAGTAGCA CCAAGCAAGC
  S
  GTCAGAGCTC AAACTTTAGA AGAGTGGGAG GACCGAGAGA GGCAGACCAG GGAGAGGCAA
  GGAAGGGAGA AGGGGAGCGG GTGCTCCTAG GGGTAGGCAG GCTCAAGGCG GGAGGGTCTC
  GACCCGGGAC CACCGTACCT TGGGCGGCAG GGCGAAGAGA ATGGGCAGCA GAGCCAGCGG
  CACCAGCAGC AGCACCAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37514188	NES08887175	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329463					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514188	NES08887175	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165314832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	within coordinates
Rr569926	regulatory region 569926	639 bp distal
Rr569927	regulatory region 569927	188 bp proximal
Rr569928	regulatory region 569928	308 bp proximal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	Intron
Tssr27627	transcription start site region 27627	275 bp downstream