rs27329469 SNP Detail

Summary

• ID
  rs27329469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165314080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAAGTA AAGAGACGGT
  CATCTCATTT TAAAGCCAAG GAAAGTGAAA CCTGGACAAG GAAGGGAGCC GGGGAGCCCC
  CAGGCCAGTT GCTCGCTCGT CCAGGGCCCC ATTGGCCTTG GCAAGAGTGA CCTACTCCTT
  CTGAGGTCAT TTATTTGCTC TCTTCAATGT CAACAGAGTC TGACGGGCTA GATAGCTGAG
  M
  ACTAAAGGAC TTGCTGTGCA CGGCCAGCCT GGGGTCACCG TTCCTTGTCA GGCACGCAGG
  AGCCCTTCTG CAGCAGGCTG CTCCCTGGGG CTCTGCTGCC TGTCACATAT TAAAGGACAC
  CATCACCTCT CCTTTATTTT GTGACCATCG GCTAGCTCAC TCAGCACTGT TGTGATGTGG
  CCAAGTACCT TCTGGAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37514194	NES08887197	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329469					SNP	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37514194	NES08887197	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165314080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	648 bp proximal
Rr569924	regulatory region 569924	1868 bp distal
Rr569925	regulatory region 569925	1693 bp distal
Rr569926	regulatory region 569926	within coordinates
Rr569927	regulatory region 569927	940 bp proximal
Rr569928	regulatory region 569928	1060 bp proximal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	Intron
Tssr27627	transcription start site region 27627	1027 bp downstream