rs27329657 SNP Detail

Summary

• ID
  rs27329657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166049092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTCCTGGG GACAGAGCTC TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG ACCCAGGTCA GGAGAGATGC TCTCTGCAGC CCATTTGTCA GCACCAGAGG
  Y
  CTTGCAGGTG GATATGCAAA TCAACCTGAC TGCCAACACT CCCTGCTCCA GGAGGGCAGA
  GCCCATGAGC CCTCAAGGTC ACAATGGGCA GGAGACTCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J
ss37512077	NES08851281	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J
rs27329657					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37512077	NES08851281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166049092 () rs orientation: forward

Symbol	Name	Function Class
Gm11467	predicted gene 11467	58 bp downstream
Rr570175	regulatory region 570175	319 bp distal
Rr570176	regulatory region 570176	within coordinates