rs27329998 SNP Detail

Summary

• ID
  rs27329998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165669284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACAAGAG AGCAAAGGGG
  AGTTTGCACA CGAACACACT TTATTTTACG ATGTGCTAAC TTCAAGCAGG TTTTAATGGG
  GCAGCTGTGG TGGGGTACAC CTGTAAGCCC AGCCCGTGGA AGAGGGAGAT GGGAGGATCT
  TCCTGCCAAG AACATTCCTT AAGTCACCCC TCCATTGCAT CTCTTCTCAG ATCCTCGCAG
  Y
  CAGCACTTTA GAGATCACCA GGAAAAAGAA TTCCATGGTC AACACTGCCC CAGTGCTCCT
  GTCCTACTGT GGGTCCTGAC TCCTTGTGCT CTCAACAGAG CTTACACATA GGGGAGGCTC
  GGCGTAGCCA GTTACGGTCG CCATGGTAGA GGTGGGAAGG CTAAGGCATA AAGACATTAA
  ATATGTCCCC AAAGCCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37513138	NES08876139	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27329998					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513138	NES08876139	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165669284 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr570021	regulatory region 570021			632 bp distal
Rr570022	regulatory region 570022			1229 bp distal
Rr570023	regulatory region 570023			1328 bp proximal
Tssr27636	transcription start site region 27636			667 bp downstream
Zmynd8	zinc finger, MYND-type containing 8			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant