rs27330002 SNP Detail

Summary

• ID
  rs27330002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165668141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCTGAT CCCAACTGTG
  CTATCCCTGC CTGTGGAGGT GTCTGAGTAT GGACAGCCTC CTCACCCTGG GCTGACTAGC
  AGCTGTCATC AATGCTAACA GCAGAGGGCG GGAGGGAGCA GCAGGAGGAA ACAGGCCAGG
  CCTCAGGGCT GGGCTGGGAG GATTTGCCAA GTGACAGTCC TTTCTGGACT TTGTGGACTA
  Y
  AGTGAGAGCT GGCAATGCTG AACCCAGGGC CCAATCTGTT CCCTGTCCCT GTGTGGCCTG
  CTGTTTAAGA AGGGTATAGA ACATTGGGGT TGGGACACAA AAAAATTCAA TAGTTCTTTT
  TCTCTTTTTT TTCCCTGTAT GAGTGTTTTG CTTGCATCTA CGTCTGCGCA CCATGTGTAT
  GCCTGGTGCC CAAGAAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37513142	NES08876244	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	T	T	T	T	C
ss45237307	mCV22665684	ABI	CRAMUS_MOUSE	f	SNP	C	C						T		T
ss148245306	ENSMUSSNP5909604	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27330002					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513142	NES08876244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165668141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr570021	regulatory region 570021			within coordinates
Rr570022	regulatory region 570022			86 bp distal
Tssr27636	transcription start site region 27636			1810 bp downstream
Zmynd8	zinc finger, MYND-type containing 8			Intron
				Noncoding-Transcript-Variant