rs27330165 SNP Detail

Summary

• ID
  rs27330165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165620317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGATTT TGTTATTAGG
  TTTTTCATTT TATGAGCAAC ATAAATTTTA TGGCACAGAT CTCAACTCTC ACCATCATGG
  CGTGTTTACA TGATTCCACT GGGGTGGTTA CGTTACACAG ATCAAAACAG AATGGAGTCC
  AGAAGGCCCG TCTGCTCCTG GCACTTCTAC CCTTCCCCTC CGCTGCACTG GTATCTGTCT
  Y
  GGGGCCTGGT CCAGAACATG GGCTCATATA GAAGGACCCC TTGGTGCCTG GCTTCCCTCC
  TGTGGAATGT TCACAGGTGT CTTGGACCCG TAGTATATCC TGACTAACAT GCAGACTTGA
  CCTAAGAGTT ATGGACCTGC TGGGTGTTGT AGCATGTGCC CATATCCTGG GAGGCAGGGG
  CAGGATCATG ACTAACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37513310	NES08877454	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27330165					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37513310	NES08877454	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165620317 () rs orientation: forward

Symbol	Name	Function Class
Rr570001	regulatory region 570001	348 bp proximal
Rr570002	regulatory region 570002	566 bp proximal
Rr570003	regulatory region 570003	676 bp proximal