rs27331076 SNP Detail

Summary

• ID
  rs27331076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163629059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC CAGCATCCTG GGGACGTCAG
  Y
  GTCTAAGGAG GACTGCCTCT GGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37520003	NES08873812	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T		C	C	T	T		T
ss45203469	mCV23178861	ABI	CRAMUS_MOUSE	f	SNP	C	C						C		T
ss148212622	ENSMUSSNP1725227	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss320604019	CHEV_2_163612875	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27331076					SNP	C	C	T	T	T	T	T	C	C	T	T	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37520003	NES08873812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163629059 () rs orientation: forward

Symbol	Name	Function Class
Gm75515	predicted gene, 75515	within coordinates
Rr569489	regulatory region 569489	534 bp proximal
Rr569490	regulatory region 569490	1431 bp proximal
Rr569491	regulatory region 569491	1537 bp proximal