rs27331940 SNP Detail

Summary

• ID
  rs27331940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164330320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCCCCAC ATCTGTGCTT
  GCCTTACCCT ATTCCCGCAC AGGGGCTGAC ATGGACCCAA ATCCGAGAGC AGCCCTGGAG
  CGCCAACAGC TGCGGCTCCG GGAGAGGCAG AAGTTCTTTG AGGACATTTT ACAGCCAGAG
  ACAGAGTTTG TCTTCCCCCT GTCCCATCTG CACCTGGAGT CACAAAGACG TAAGTTTCAA
  K
  TTCTGAGGAA TGGAATTGGG CTAGGTTGGG AAAGGTGTCC TTGTGGCTCT CAGATCTTGG
  GAACCAGCTC CCTTCCTGTT TTTGAGGCCC AATTTGGGGT CTTGCATGTA CATGTGACCA
  TCTCTCAGCT CTAGCCTGGT CTGTTTGCTC TCCTCCCTTG TGTGCAGCCC CCATAGGTAG
  CATCTCGTCT ATGGAAGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37517275	NES08887191	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27331940					SNP	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517275	NES08887191	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164330320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12662	CpG island 12662	990 bp distal
Dbndd2	dysbindin domain containing 2	within coordinates
Gm10725	predicted gene 10725	1937 bp upstream
Gm20458	predicted gene 20458	within coordinates
Tssr21599	transcription start site region 21599	1745 bp downstream
Tssr21600	transcription start site region 21600	1502 bp downstream
Tssr21601	transcription start site region 21601	273 bp downstream
Tssr21602	transcription start site region 21602	200 bp downstream