rs27331941 SNP Detail

Summary

• ID
  rs27331941
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164330185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGCTTGCCTT ACCCTATTCC CGCACAGGGG CTGACATGGA CCCAAATCCG
  M
  GAGCAGCCCT GGAGCGCCAA CAGCTGCGGC TCCGGGAGAG GCAGAAGTTC           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss37517276	NES08887190	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs27331941					SNP	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37517276	NES08887190	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164330185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12662	CpG island 12662	855 bp distal
Dbndd2	dysbindin domain containing 2	within coordinates
Gm10725	predicted gene 10725	1802 bp upstream
Gm20458	predicted gene 20458	within coordinates
Rr569631	regulatory region 569631	1378 bp distal
Rr569632	regulatory region 569632	726 bp distal
Rr569633	regulatory region 569633	49 bp distal
Tssr21599	transcription start site region 21599	1610 bp downstream
Tssr21600	transcription start site region 21600	1367 bp downstream
Tssr21601	transcription start site region 21601	138 bp downstream
Tssr21602	transcription start site region 21602	65 bp downstream