rs27333180 SNP Detail

Summary

• ID
  rs27333180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154703299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTCTGG AGAGGGCCAG
  GTTTTGATAT TAGCGTGAGA ACACACAATC TGGAAGCTTT GGATCTAATT TATATGCCCA
  CCCTTGAAAT GCTGTTAAGT TCTTGGCCTG TATCTGAAGA AAAAGTGTGC TGAAGTGGTC
  CACAGGAAAG AAAGGCCTTA GAGTCTGGAG TCCTGGGCTT CTCTGTTGGG TAATCAGTTC
  Y
  CTGGTGTCCT GGATTTCACT TGTTAAACCT TCTCAGGTGT TTTTAACCAG GTTCTCATGT
  TCTACCCTTA CTGTACACAC AGGTAGACCG TGAATAGCCA TCCTCACTAA GTAGTTGGGA
  AAACCAAGGT TCAGAGGGTG GAAGCTCATG CTGTTGTGAG ATTTACAAAC TGATGGTGGC
  AGTTGTGAGT AGAGGGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37554710	NES08905120	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	T	C	T
ss45374659	mCV22744471	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27333180					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37554710	NES08905120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154703299 () rs orientation: forward

Symbol	Name	Function Class
Raly	hnRNP-associated with lethal yellow	within coordinates
Tssr21047	transcription start site region 21047	1669 bp downstream
Tssr21048	transcription start site region 21048	457 bp upstream