rs27333181 SNP Detail

Summary

• ID
  rs27333181
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154703201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCTGGAG AGGGCCAGGT TTTGATATTA GCGTGAGAAC
  ACACAATCTG GAAGCTTTGG ATCTAATTTA TATGCCCACC CTTGAAATGC TGTTAAGTTC
  K
  TGGCCTGTAT CTGAAGAAAA AGTGTGCTGA AGTGGTCCAC AGGAAAGAAA GGCCTTAGAG
  TCTGGAGTCC TGGGCTTCTC TGTTGGGTAA TCAGTTCCCT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37554711	NES08905119	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27333181					SNP	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37554711	NES08905119	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154703201 () rs orientation: forward

Symbol	Name	Function Class
Raly	hnRNP-associated with lethal yellow	within coordinates
Tssr21047	transcription start site region 21047	1571 bp downstream
Tssr21048	transcription start site region 21048	555 bp upstream