rs27333183 SNP Detail

Summary

• ID
  rs27333183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154702493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTA ATCACAATAC CAGCTCCTGA
  Y
  CAGGTCTTGA CTAGAAGTTG TAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37554713	NES08905170	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	T		C	C	T	C		C	T	T	C		T
ss45292828	mCV22744284	ABI	CRAMUS_MOUSE	f	SNP		T						C		C
ss148040974	ENSMUSSNP3562183	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
ss320571825	CHEV_2_154686309	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27333183					SNP	T	T	C	C	T	C	T	C	C	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37554713	NES08905170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154702493 () rs orientation: forward

Symbol	Name	Function Class
Raly	hnRNP-associated with lethal yellow	within coordinates
Tssr21047	transcription start site region 21047	863 bp downstream
Tssr21048	transcription start site region 21048	1263 bp upstream