rs27335144 SNP Detail

Summary

• ID
  rs27335144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158226396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGAAGTT AGGGGAGGCT CAAGAGCCCT GCCTTCTGTT
  CAAGGCTCAT GTTACACAGT ATTCCAAGTT TCTAGTGCAT ATTAGTAGTG AGAGGTTCTC
  R
  CATCAGTGTG ACATCTACAA CTGTGTCTGG GGCCTTGTCT TCTGTCTGTA GAGACCTGTG
  CTCGTGTACA CTGCAGGCAT GTATTATGCC TCTCCCTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543168	NES08889332	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G		G	G	G	G		A
ss320588889	CHEV_2_158210212	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27335144					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543168	NES08889332	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158226396 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21319	transcription start site region 21319	1888 bp downstream
Tssr21320	transcription start site region 21320	1852 bp downstream
Tssr21321	transcription start site region 21321	1742 bp downstream
Tssr21322	transcription start site region 21322	1619 bp downstream
Tssr21323	transcription start site region 21323	1575 bp downstream
Tssr21324	transcription start site region 21324	1537 bp downstream
Tssr21325	transcription start site region 21325	1501 bp downstream
Tssr21326	transcription start site region 21326	1477 bp downstream
Tssr21327	transcription start site region 21327	1440 bp downstream
Tssr21328	transcription start site region 21328	1394 bp downstream
Tssr21329	transcription start site region 21329	1381 bp downstream
Tssr21330	transcription start site region 21330	1292 bp downstream
Tssr21331	transcription start site region 21331	782 bp downstream
Tssr21332	transcription start site region 21332	647 bp downstream
Tssr21333	transcription start site region 21333	617 bp downstream
Tssr21334	transcription start site region 21334	141 bp upstream
Tssr21335	transcription start site region 21335	497 bp upstream
Tssr21336	transcription start site region 21336	551 bp upstream
Tssr21337	transcription start site region 21337	655 bp upstream
Tssr21338	transcription start site region 21338	1222 bp upstream
Tssr27228	transcription start site region 27228	1258 bp upstream