rs27335145 SNP Detail

Summary

• ID
  rs27335145
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158226232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTCTTGA ACTCAAAATT CAAATTGCCC TAAAATGTAA
  AGATCCCAAA TCTTACATAA ATAGCCTTAG GTTTAAATCT TTCAAAGTTA ATGTGAATTA
  W
  GTAGGATTTG CTTGTGGTTT AGTTTTGTGC CTGCCCTTGG TCTGACGTAA AGGAGCAGAC
  AAGGGAAGAA GTTAGGGGAG GCTCAAGAGC CCTGCCTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543169	NES08889329	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	A		A	A	A	A		T
ss320588888	CHEV_2_158210048	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27335145					SNP	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543169	NES08889329	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158226232 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21319	transcription start site region 21319	1724 bp downstream
Tssr21320	transcription start site region 21320	1688 bp downstream
Tssr21321	transcription start site region 21321	1578 bp downstream
Tssr21322	transcription start site region 21322	1455 bp downstream
Tssr21323	transcription start site region 21323	1411 bp downstream
Tssr21324	transcription start site region 21324	1373 bp downstream
Tssr21325	transcription start site region 21325	1337 bp downstream
Tssr21326	transcription start site region 21326	1313 bp downstream
Tssr21327	transcription start site region 21327	1276 bp downstream
Tssr21328	transcription start site region 21328	1230 bp downstream
Tssr21329	transcription start site region 21329	1217 bp downstream
Tssr21330	transcription start site region 21330	1128 bp downstream
Tssr21331	transcription start site region 21331	618 bp downstream
Tssr21332	transcription start site region 21332	483 bp downstream
Tssr21333	transcription start site region 21333	453 bp downstream
Tssr21334	transcription start site region 21334	305 bp upstream
Tssr21335	transcription start site region 21335	661 bp upstream
Tssr21336	transcription start site region 21336	715 bp upstream
Tssr21337	transcription start site region 21337	819 bp upstream
Tssr21338	transcription start site region 21338	1386 bp upstream
Tssr27228	transcription start site region 27228	1094 bp upstream