rs27335147 SNP Detail

Summary

• ID
  rs27335147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTCGGGATGT TCTGTGATGG TTCCTCAGGT ACTTTGTAAT CTCCTGTTAA
  Y
  CTGATAGGAG AGTCTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543171	NES08889416	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335147					SNP	C	C	C	C	C	C	T	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543171	NES08889416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225106 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1788 bp downstream
Tssr21318	transcription start site region 21318	1012 bp downstream
Tssr21319	transcription start site region 21319	598 bp downstream
Tssr21320	transcription start site region 21320	562 bp downstream
Tssr21321	transcription start site region 21321	452 bp downstream
Tssr21322	transcription start site region 21322	329 bp downstream
Tssr21323	transcription start site region 21323	285 bp downstream
Tssr21324	transcription start site region 21324	247 bp downstream
Tssr21325	transcription start site region 21325	211 bp downstream
Tssr21326	transcription start site region 21326	187 bp downstream
Tssr21327	transcription start site region 21327	150 bp downstream
Tssr21328	transcription start site region 21328	104 bp downstream
Tssr21329	transcription start site region 21329	91 bp downstream
Tssr21330	transcription start site region 21330	2 bp downstream
Tssr21331	transcription start site region 21331	495 bp upstream
Tssr21332	transcription start site region 21332	632 bp upstream
Tssr21333	transcription start site region 21333	664 bp upstream
Tssr21334	transcription start site region 21334	1431 bp upstream
Tssr21335	transcription start site region 21335	1787 bp upstream
Tssr21336	transcription start site region 21336	1841 bp upstream
Tssr21337	transcription start site region 21337	1945 bp upstream
Tssr27228	transcription start site region 27228	15 bp downstream