rs27335151 SNP Detail

Summary

• ID
  rs27335151
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAAGTGT AGTCGATAGG AGTTAGATTA CTTGAAAGTT
  TCCACCTAAG ATTTTTTTGG TACAGCCTGA GAATAGGTGG GATGTAGTAA GGAATAGAAC
  K
  GTCCAGAAAG TTCTTCTTCC ATGGAAATGT TATTCTTCGA TACTGTTCAC ATGTTTGTTT
  TGTTTGCAGT GTCAACCGGA CATGTTCTTT CACACTCTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543175	NES08889412	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		G	G		G	G	G	G		T
ss148114640	ENSMUSSNP2820703	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						T
ss320588878	CHEV_2_158208747	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27335151					SNP	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543175	NES08889412	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224931 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1613 bp downstream
Tssr21318	transcription start site region 21318	837 bp downstream
Tssr21319	transcription start site region 21319	423 bp downstream
Tssr21320	transcription start site region 21320	387 bp downstream
Tssr21321	transcription start site region 21321	277 bp downstream
Tssr21322	transcription start site region 21322	154 bp downstream
Tssr21323	transcription start site region 21323	110 bp downstream
Tssr21324	transcription start site region 21324	72 bp downstream
Tssr21325	transcription start site region 21325	36 bp downstream
Tssr21326	transcription start site region 21326	12 bp downstream
Tssr21327	transcription start site region 21327	24 bp upstream
Tssr21328	transcription start site region 21328	62 bp upstream
Tssr21329	transcription start site region 21329	75 bp upstream
Tssr21330	transcription start site region 21330	97 bp upstream
Tssr21331	transcription start site region 21331	670 bp upstream
Tssr21332	transcription start site region 21332	807 bp upstream
Tssr21333	transcription start site region 21333	839 bp upstream
Tssr21334	transcription start site region 21334	1606 bp upstream
Tssr21335	transcription start site region 21335	1962 bp upstream
Tssr27228	transcription start site region 27228	190 bp downstream