rs27335152 SNP Detail

Summary

• ID
  rs27335152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CGGTGGCCAA GGACTGAAAA ACAGAAGTGT AGTCGATAGG AGTTAGATTA
  Y
  TTGAAAGTTT CCACCTAAGA TTTTTTTGGT ACAGCCTGAG AATAGGTGGG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543176	NES08889411	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T		T	C	C	T		T
ss148114635	ENSMUSSNP85873	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss320588877	CHEV_2_158208677	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27335152					SNP	C	C	C	C	C	C	T	C	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543176	NES08889411	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224861 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1543 bp downstream
Tssr21318	transcription start site region 21318	767 bp downstream
Tssr21319	transcription start site region 21319	353 bp downstream
Tssr21320	transcription start site region 21320	317 bp downstream
Tssr21321	transcription start site region 21321	207 bp downstream
Tssr21322	transcription start site region 21322	84 bp downstream
Tssr21323	transcription start site region 21323	40 bp downstream
Tssr21324	transcription start site region 21324	2 bp downstream
Tssr21325	transcription start site region 21325	23 bp upstream
Tssr21326	transcription start site region 21326	45 bp upstream
Tssr21327	transcription start site region 21327	94 bp upstream
Tssr21328	transcription start site region 21328	132 bp upstream
Tssr21329	transcription start site region 21329	145 bp upstream
Tssr21330	transcription start site region 21330	167 bp upstream
Tssr21331	transcription start site region 21331	740 bp upstream
Tssr21332	transcription start site region 21332	877 bp upstream
Tssr21333	transcription start site region 21333	909 bp upstream
Tssr21334	transcription start site region 21334	1676 bp upstream
Tssr27228	transcription start site region 27228	260 bp downstream