rs27335153 SNP Detail

Summary

• ID
  rs27335153
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTTGTAAAAC AGAAAAAAAT TTAAATAGCA ATGTGATCAA ACTTGGATTT
  W
  AAAAAAAATA GGGGCAAATT GGAACCAAGA AGGAATATTT CTTATGGATA           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543177	NES08889410	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		A		T	A		A	T	A		T
ss45379455	mCV22929135	ABI	CRAMUS_MOUSE	f	SNP		T	T			T		A
ss148114630	ENSMUSSNP5187100	ENSEMBL	ENSEMBL_Sanger	f	SNP			T					A
ss320588876	CHEV_2_158208573	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27335153					SNP	T	T	T	T	T	T	A	A	T	A	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543177	NES08889410	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224757 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1439 bp downstream
Tssr21318	transcription start site region 21318	663 bp downstream
Tssr21319	transcription start site region 21319	249 bp downstream
Tssr21320	transcription start site region 21320	213 bp downstream
Tssr21321	transcription start site region 21321	103 bp downstream
Tssr21322	transcription start site region 21322	8 bp upstream
Tssr21323	transcription start site region 21323	55 bp upstream
Tssr21324	transcription start site region 21324	87 bp upstream
Tssr21325	transcription start site region 21325	127 bp upstream
Tssr21326	transcription start site region 21326	149 bp upstream
Tssr21327	transcription start site region 21327	198 bp upstream
Tssr21328	transcription start site region 21328	236 bp upstream
Tssr21329	transcription start site region 21329	249 bp upstream
Tssr21330	transcription start site region 21330	271 bp upstream
Tssr21331	transcription start site region 21331	844 bp upstream
Tssr21332	transcription start site region 21332	981 bp upstream
Tssr21333	transcription start site region 21333	1013 bp upstream
Tssr21334	transcription start site region 21334	1780 bp upstream
Tssr27228	transcription start site region 27228	364 bp downstream