rs27335154 SNP Detail

Summary

• ID
  rs27335154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCGTGGAC TCCGCTGCTG
  GCGCTCCGCA GAAGCCACCT GGAGGATGAC CAGCCAGGAT TGTTCAGGGC TTTCATTGTC
  TTGGTCACAT TGCTTCATTG TCTTTGTCTG TCCAACCGTC TGTCTAATCA GCCTTAGCAA
  AATAAGCTAT TTTATCTTGT CCTTTCGATT AAAAAAAACA ACAAAAGACA GACTTCAAGC
  Y
  GTTTTGGCAC CCAGAGACCA AACCCCACCC AGAGTCTTTG TTTTTATGAT TACTAAAACT
  TCATGTCTTA AATTTATATC TTTGTAAAAC AGAAAAAAAT TTAAATAGCA ATGTGATCAA
  ACTTGGATTT TAAAAAAAAT AGGGGCAAAT TGGAACCAAG AAGGAATATT TCTTATGGAT
  AATACGGTGG CCAAGGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543178	NES08889409	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335154					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543178	NES08889409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224626 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1308 bp downstream
Tssr21318	transcription start site region 21318	532 bp downstream
Tssr21319	transcription start site region 21319	118 bp downstream
Tssr21320	transcription start site region 21320	82 bp downstream
Tssr21321	transcription start site region 21321	within coordinates
Tssr21322	transcription start site region 21322	139 bp upstream
Tssr21323	transcription start site region 21323	186 bp upstream
Tssr21324	transcription start site region 21324	218 bp upstream
Tssr21325	transcription start site region 21325	258 bp upstream
Tssr21326	transcription start site region 21326	280 bp upstream
Tssr21327	transcription start site region 21327	329 bp upstream
Tssr21328	transcription start site region 21328	367 bp upstream
Tssr21329	transcription start site region 21329	380 bp upstream
Tssr21330	transcription start site region 21330	402 bp upstream
Tssr21331	transcription start site region 21331	975 bp upstream
Tssr21332	transcription start site region 21332	1112 bp upstream
Tssr21333	transcription start site region 21333	1144 bp upstream
Tssr21334	transcription start site region 21334	1911 bp upstream
Tssr27228	transcription start site region 27228	495 bp downstream