rs27335155 SNP Detail

Summary

• ID
  rs27335155
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTCATTGTC TTGGTCACAT TGCTTCATTG TCTTTGTCTG
  TCCAACCGTC TGTCTAATCA GCCTTAGCAA AATAAGCTAT TTTATCTTGT CCTTTCGATT
  R
  AAAAAAACAA CAAAAGACAG ACTTCAAGCC GTTTTGGCAC CCAGAGACCA AACCCCACCC
  AGAGTCTTTG TTTTTATGAT TACTAAAACT TCATGTCTTA A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543179	NES08889408	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G		A	G	G	A	A	G	G
ss148114625	ENSMUSSNP3075360	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335155					SNP	A	A	A	A	A	A	G	G	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543179	NES08889408	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224596 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1278 bp downstream
Tssr21318	transcription start site region 21318	502 bp downstream
Tssr21319	transcription start site region 21319	88 bp downstream
Tssr21320	transcription start site region 21320	52 bp downstream
Tssr21321	transcription start site region 21321	24 bp upstream
Tssr21322	transcription start site region 21322	169 bp upstream
Tssr21323	transcription start site region 21323	216 bp upstream
Tssr21324	transcription start site region 21324	248 bp upstream
Tssr21325	transcription start site region 21325	288 bp upstream
Tssr21326	transcription start site region 21326	310 bp upstream
Tssr21327	transcription start site region 21327	359 bp upstream
Tssr21328	transcription start site region 21328	397 bp upstream
Tssr21329	transcription start site region 21329	410 bp upstream
Tssr21330	transcription start site region 21330	432 bp upstream
Tssr21331	transcription start site region 21331	1005 bp upstream
Tssr21332	transcription start site region 21332	1142 bp upstream
Tssr21333	transcription start site region 21333	1174 bp upstream
Tssr21334	transcription start site region 21334	1941 bp upstream
Tssr27228	transcription start site region 27228	525 bp downstream