rs27335156 SNP Detail

Summary

• ID
  rs27335156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTATAGACA GGACTACCAG GCCTAAATAA ACAGGGTCAA CTGGACCCCT
  R
  AGAAAGATGA GATAAAATGC GTGCCGATTA TTTTGCTAGG TGAAGTTCAC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543180	NES08889407	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G		G	A	A	G		G
ss320588875	CHEV_2_158208117	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27335156					SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543180	NES08889407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224301 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	983 bp downstream
Tssr21318	transcription start site region 21318	207 bp downstream
Tssr21319	transcription start site region 21319	188 bp upstream
Tssr21320	transcription start site region 21320	227 bp upstream
Tssr21321	transcription start site region 21321	319 bp upstream
Tssr21322	transcription start site region 21322	464 bp upstream
Tssr21323	transcription start site region 21323	511 bp upstream
Tssr21324	transcription start site region 21324	543 bp upstream
Tssr21325	transcription start site region 21325	583 bp upstream
Tssr21326	transcription start site region 21326	605 bp upstream
Tssr21327	transcription start site region 21327	654 bp upstream
Tssr21328	transcription start site region 21328	692 bp upstream
Tssr21329	transcription start site region 21329	705 bp upstream
Tssr21330	transcription start site region 21330	727 bp upstream
Tssr21331	transcription start site region 21331	1300 bp upstream
Tssr21332	transcription start site region 21332	1437 bp upstream
Tssr21333	transcription start site region 21333	1469 bp upstream
Tssr27228	transcription start site region 27228	820 bp downstream