rs27335157 SNP Detail

Summary

• ID
  rs27335157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGCTCTCACC CAGGAGGTAA CAGGTAAGTG GGAAGATAGA ATATGCCTGG
  R
  TTCTTCCCAG TCCTGAAACA AAGCTTTTTT TTTTTTTTTT TTTTTTTTAC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37543181	NES08889423	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		A	A		G
ss320588874	CHEV_2_158207859	CHEVERUD	SCREENING_POP	f	SNP								A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27335157					SNP	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543181	NES08889423	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224043 () rs orientation: forward

Symbol	Name	Function Class
Rr568752	regulatory region 568752	1952 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	725 bp downstream
Tssr21318	transcription start site region 21318	47 bp upstream
Tssr21319	transcription start site region 21319	446 bp upstream
Tssr21320	transcription start site region 21320	485 bp upstream
Tssr21321	transcription start site region 21321	577 bp upstream
Tssr21322	transcription start site region 21322	722 bp upstream
Tssr21323	transcription start site region 21323	769 bp upstream
Tssr21324	transcription start site region 21324	801 bp upstream
Tssr21325	transcription start site region 21325	841 bp upstream
Tssr21326	transcription start site region 21326	863 bp upstream
Tssr21327	transcription start site region 21327	912 bp upstream
Tssr21328	transcription start site region 21328	950 bp upstream
Tssr21329	transcription start site region 21329	963 bp upstream
Tssr21330	transcription start site region 21330	985 bp upstream
Tssr21331	transcription start site region 21331	1558 bp upstream
Tssr21332	transcription start site region 21332	1695 bp upstream
Tssr21333	transcription start site region 21333	1727 bp upstream
Tssr27228	transcription start site region 27228	1078 bp downstream