rs27335159 SNP Detail

Summary

• ID
  rs27335159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158222873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTAAGCTAC TGGCCTTGCC TGGTTTTCTG CCCTAGGTGA TGGTGGTGGT
  R
  CCCAGGAAGA GCAAGGTTGC TGGCACGCAA CATGCCTGCA GCCCTTGATG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543183	NES08889465	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	G		G	A	A	G		G
ss148114595	ENSMUSSNP3676202	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss320588868	CHEV_2_158206689	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27335159					SNP	A	A	A	A	A	A	A	G	A	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543183	NES08889465	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158222873 () rs orientation: forward

Symbol	Name	Function Class
Gm25129	predicted gene, 25129	1287 bp downstream
Rr397444	regulatory region 397444	872 bp downstream
Rr568752	regulatory region 568752	782 bp distal
Rr568753	regulatory region 568753	1026 bp distal
Rr568754	regulatory region 568754	988 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	424 bp upstream
Tssr21318	transcription start site region 21318	1217 bp upstream
Tssr21319	transcription start site region 21319	1616 bp upstream
Tssr21320	transcription start site region 21320	1655 bp upstream
Tssr21321	transcription start site region 21321	1747 bp upstream
Tssr21322	transcription start site region 21322	1892 bp upstream
Tssr21323	transcription start site region 21323	1939 bp upstream
Tssr21324	transcription start site region 21324	1971 bp upstream