rs27335164 SNP Detail

Summary

• ID
  rs27335164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158222614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAATGACAG TATATAGCGG AGGCTGCTGG ATGTTGGGAC
  CTTGGTGGGA GGAGCCCTGA GAGGAAGGCC CTGAGCTCTG TCTCTGCCAC TTATATGACT
  R
  CTCAGTTGTC CTGTGGGGAG CTGTTTTAGA CTCATAGGTC TGCATGCGTG TTCACTTTCT
  GTCCATCATT AATTAGGAAC GTACTCCCCA ACATCAGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37543188	NES08889460	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G		G		G	A	A	G		A
ss148114581	ENSMUSSNP45826	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320588862	CHEV_2_158206430	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27335164					SNP	A	A	A	A	A	A	G	G	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543188	NES08889460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158222614 () rs orientation: forward

Symbol	Name	Function Class
Gm25129	predicted gene, 25129	1028 bp downstream
Rr397444	regulatory region 397444	613 bp downstream
Rr568752	regulatory region 568752	523 bp distal
Rr568753	regulatory region 568753	767 bp distal
Rr568754	regulatory region 568754	729 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	683 bp upstream
Tssr21318	transcription start site region 21318	1476 bp upstream
Tssr21319	transcription start site region 21319	1875 bp upstream
Tssr21320	transcription start site region 21320	1914 bp upstream