rs27335243 SNP Detail

Summary

• ID
  rs27335243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158200835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAAGGC ACACACGTGG
  GTGCACTTCT GCCACTGGCA GAAGAATGAA CGGGAAGGGA GGGGCCTCAA AGAGCCAGAG
  CAGATAGGTG CTCCGGACCA CCCTAACTCT CCATCGTTCA ACTATGACTT TTCCCTCCAC
  TGCTAACAAG TCACTGCTAC CCAACACAAT GACAAAAAGA GGGAGACCGT GGCATATACA
  R
  GTGTCTTCAA TGCCTACGTC CACTCCCTTG CCCTTACAAT TCACTAACAC TGGAAAGGCC
  TCACACTTAC CCATGCACGA CCTAGGTGGG AGGATCCACA CACCACTCCC CACTCATCTT
  CCCCGCCCCC AAAGAGGCAG AAAATACTAC AGGAAACTCT AGGGACTCAA AGGCTGGGGC
  TCCAGACTGG ACAGAGCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543267	NES08889916	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335243					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543267	NES08889916	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158200835 () rs orientation: forward

Symbol	Name	Function Class
Gm23925	predicted gene, 23925	883 bp downstream
Gm26003	predicted gene, 26003	443 bp upstream
Gm75379	predicted gene, 75379	1351 bp downstream
Rr568742	regulatory region 568742	928 bp proximal
Rr568743	regulatory region 568743	1618 bp proximal
Snhg17	small nucleolar RNA host gene 17	within coordinates
Tssr27224	transcription start site region 27224	1652 bp downstream