rs27335250 SNP Detail

Summary

• ID
  rs27335250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158200199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCTTAAG GGCTGTTACA
  CGCCCCGCCC CACCCCACCC TGGCACACAC AGCTCCCCTC AGTCCAGCCC CACCTCTCCT
  CCTGTCATCT ACCTTCTGCT CCTCTGTGAA AAGTTAGGGA ACCCACCTAG AGATCCTTTG
  GAAATCTGTG CTGACCTAGC ACATGCAAAC ACCCCAAGTT TCTGGAAACA GAACACCAAG
  Y
  TGCGAAGACC CAGCACTGAC TTGTGCAGCT TCCAGAAAGC GCCACCCACA CTTCCGTAAG
  GCTGCAGAGC AAGACACAAG TGTAGGAAAG CTCCAGGCCA GACGCCCCGA GCTCGGAGCC
  CGTCTTTCCG CATCCTTTCC CTGCACTACC AATGACCAGG ACACGGCAGC CAAGATCACT
  TTCGGATGCA GGGGCGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543274	NES08889909	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335250					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543274	NES08889909	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158200199 () rs orientation: forward

Symbol	Name	Function Class
Gm23925	predicted gene, 23925	1519 bp downstream
Gm24411	predicted gene, 24411	1725 bp upstream
Gm26003	predicted gene, 26003	81 bp downstream
Gm75379	predicted gene, 75379	715 bp downstream
Rr568742	regulatory region 568742	1564 bp proximal
Snhg17	small nucleolar RNA host gene 17	within coordinates