rs27335251 SNP Detail

Summary

• ID
  rs27335251
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158200132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACGGGG ACCACAGGCT
  GGGAAGGGAG CTGCACACTC TGTACCAGGG AGCTCCTTCT CTCAACACAC GCTTAAGGGC
  TGTTACACGC CCCGCCCCAC CCCACCCTGG CACACACAGC TCCCCTCAGT CCAGCCCCAC
  CTCTCCTCCT GTCATCTACC TTCTGCTCCT CTGTGAAAAG TTAGGGAACC CACCTAGAGA
  K
  CCTTTGGAAA TCTGTGCTGA CCTAGCACAT GCAAACACCC CAAGTTTCTG GAAACAGAAC
  ACCAAGTTGC GAAGACCCAG CACTGACTTG TGCAGCTTCC AGAAAGCGCC ACCCACACTT
  CCGTAAGGCT GCAGAGCAAG ACACAAGTGT AGGAAAGCTC CAGGCCAGAC GCCCCGAGCT
  CGGAGCCCGT CTTTCCGCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37543275	NES08889908	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27335251					SNP	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543275	NES08889908	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158200132 () rs orientation: forward

Symbol	Name	Function Class
Gm23925	predicted gene, 23925	1586 bp downstream
Gm24411	predicted gene, 24411	1658 bp upstream
Gm26003	predicted gene, 26003	148 bp downstream
Gm75379	predicted gene, 75379	648 bp downstream
Rr568742	regulatory region 568742	1631 bp proximal
Snhg17	small nucleolar RNA host gene 17	within coordinates