rs27335255 SNP Detail

Summary

• ID
  rs27335255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158199944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCTGAAG AGTCACCCTC
  TGAAATTCCT AGCCCCCAAT AAACTCTTCA CAGGCACCAG GCACAAATGA CATACATACA
  TATGTGCATT CACATAGACA CATGAAACAA ATAATGTTGG ACTGCATTTT GGTCTGCAAA
  CCATGCATTT TAAGACCAGT GGCTCACAAG TGATACAAAA ACTCATTGGG CCACGGGGAC
  Y
  ACAGGCTGGG AAGGGAGCTG CACACTCTGT ACCAGGGAGC TCCTTCTCTC AACACACGCT
  TAAGGGCTGT TACACGCCCC GCCCCACCCC ACCCTGGCAC ACACAGCTCC CCTCAGTCCA
  GCCCCACCTC TCCTCCTGTC ATCTACCTTC TGCTCCTCTG TGAAAAGTTA GGGAACCCAC
  CTAGAGATCC TTTGGAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37543279	NES08889959	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27335255					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543279	NES08889959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158199944 () rs orientation: forward

Symbol	Name	Function Class
Gm23925	predicted gene, 23925	1774 bp downstream
Gm24411	predicted gene, 24411	1470 bp upstream
Gm26003	predicted gene, 26003	336 bp downstream
Gm75379	predicted gene, 75379	460 bp downstream
Rr568742	regulatory region 568742	1819 bp proximal
Snhg17	small nucleolar RNA host gene 17	within coordinates