rs27335261 SNP Detail

Summary

• ID
  rs27335261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158198843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAATGAAA AAAGACAAGT TGGGGGGGGG GTTAACTTCT
  GAGGACTCAC GAGTCCTCAT GAGTCTGGGA CGGGACTGCT CCCTAACAAG TGCCCAGAGT
  Y
  CAGAGAAGTT CAGAGAAGGC TAACTGCACC CCAATTGTAG CCATTCTCAA GCCAACTGCA
  GAACCCAATG AAGCCATGCA GGTTCCCAGG GGCTCCTGTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37543285	NES08889971	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27335261					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37543285	NES08889971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158198843 () rs orientation: forward

Symbol	Name	Function Class
Gm24411	predicted gene, 24411	369 bp upstream
Gm26003	predicted gene, 26003	1437 bp downstream
Gm75379	predicted gene, 75379	within coordinates
Snhg17	small nucleolar RNA host gene 17	within coordinates