AATAGAGGAC AGAGGCAAAA CACAGGGTTT TTTTTTTTTT TTCTGTCATT TTCCACAAAT CCTATCACCA TAGGAGACCA GGAAATCCTG AGCCCACCTC TCTGGCCTCC CTTGGAGCAG TGTCAGTAGC AGCCTCTTTA GTGGGGACGC TGAGCCCTTT GGCACCTCCA GGTCTCGTTG GCTAACCTCT CTATTCCTCA R TTCTGGCTAC GTTCCTGCCC TCAGGCCCTG CCTGGTCCAG GGCCCCTCTC TACCCACCTG AACCCTGCCA ACCCCAGCTC CCTGCTCCAG CCCTGGTCTA TGGGATTGGC TCAATCCTTT CCCACTGGGA AGCTGAGAGT AGTCCCAAAA GCCAGCCAGA ACCCCAACTC ACACTGCAGA CTCCCACCTC CCTCCCAGTT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37544168 | NES08896197 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | G | G | A |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs27335723 | SNP | G | G | G | G | G | G | A | G | G | G | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37544168 | NES08896197 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:157970865 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr568653 | regulatory region 568653 | 1350 bp distal | ||||||
Rr568654 | regulatory region 568654 | 210 bp distal | ||||||
Rr568655 | regulatory region 568655 | 855 bp proximal | ||||||
Rr568656 | regulatory region 568656 | 1064 bp proximal | ||||||
Tgm2 | transglutaminase 2, C polypeptide | Intron | ||||||
Tssr27210 | transcription start site region 27210 | 1757 bp upstream | ||||||
Tssr27211 | transcription start site region 27211 | 1635 bp upstream | ||||||
Tssr27212 | transcription start site region 27212 | 252 bp upstream | ||||||
Tssr27213 | transcription start site region 27213 | 464 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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