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rs27335723 SNP Detail
Summary
  • ID
    rs27335723
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:157970865 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATAGAGGAC AGAGGCAAAA
    CACAGGGTTT TTTTTTTTTT TTCTGTCATT TTCCACAAAT CCTATCACCA TAGGAGACCA
    GGAAATCCTG AGCCCACCTC TCTGGCCTCC CTTGGAGCAG TGTCAGTAGC AGCCTCTTTA
    GTGGGGACGC TGAGCCCTTT GGCACCTCCA GGTCTCGTTG GCTAACCTCT CTATTCCTCA
    R
    TTCTGGCTAC GTTCCTGCCC TCAGGCCCTG CCTGGTCCAG GGCCCCTCTC TACCCACCTG
    AACCCTGCCA ACCCCAGCTC CCTGCTCCAG CCCTGGTCTA TGGGATTGGC TCAATCCTTT
    CCCACTGGGA AGCTGAGAGT AGTCCCAAAA GCCAGCCAGA ACCCCAACTC ACACTGCAGA
    CTCCCACCTC CCTCCCAGTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss37544168 NES08896197 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs27335723 SNP G G G G G G A G G G G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37544168 NES08896197 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:157970865 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr568653 regulatory region 568653 1350 bp distal
Rr568654 regulatory region 568654 210 bp distal
Rr568655 regulatory region 568655 855 bp proximal
Rr568656 regulatory region 568656 1064 bp proximal
Tgm2 transglutaminase 2, C polypeptide Intron
Tssr27210 transcription start site region 27210 1757 bp upstream
Tssr27211 transcription start site region 27211 1635 bp upstream
Tssr27212 transcription start site region 27212 252 bp upstream
Tssr27213 transcription start site region 27213 464 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory