rs27335725 SNP Detail

Summary

• ID
  rs27335725
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157970475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGTGC TGTCTGTCTG
  TCTGTCTGCC TGTCTGTCTG TCTGTCTCTC TGACACATAT AGACATCGCA TTTGGAATTG
  CTGGAAGCAG AGAGTAGGTG ACAATGCTAT TTTGGGAGAG GGTGGAGAGA TGCTTTTTCT
  TTGGGCTTGC TCACATCTTT CCTAAAGAAG TACTCTACGA ACACACAAAC CAAGAGCTGC
  S
  ACTCCATTGC TGGCCTCCTC TGGGCATCTC AGCCCCACCC TGCTGCAGCT TCGAGACCCC
  TAGGGAGCGC AGTTCCTGCC TACCTTCGCT CTTCTCCTGT GGTGTGGGGT CAATGGCCTG
  CCACCCCTCA TAGCCCGGCT GTAGGTCTGG CCTGGTCATC CAGGACTCCA CCCAGCAGTG
  GAAGTTCCTA ATAGAGGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37544170	NES08896195	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27335725					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544170	NES08896195	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157970475 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	960 bp distal
Rr568654	regulatory region 568654	within coordinates
Rr568655	regulatory region 568655	1245 bp proximal
Rr568656	regulatory region 568656	1454 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1367 bp upstream
Tssr27211	transcription start site region 27211	1245 bp upstream
Tssr27212	transcription start site region 27212	110 bp downstream
Tssr27213	transcription start site region 27213	854 bp downstream