rs27335727 SNP Detail

Summary

• ID
  rs27335727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157970338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTTACT ATGTCATAAG
  GGTATTTCTC TAGAACTTTC TATAACTTCA ATGCTTCTTG TATCCCTATC TGTGCATTTA
  ATTTAATTTA ATTTTGCGAG GGAGGGGAGA GGATGTCCTT GTGCTTTCTC AGACCTTGCC
  TTGGTGCTGT CTGTCTGTCT GTCTGCCTGT CTGTCTGTCT GTCTCTCTGA CACATATAGA
  Y
  ATCGCATTTG GAATTGCTGG AAGCAGAGAG TAGGTGACAA TGCTATTTTG GGAGAGGGTG
  GAGAGATGCT TTTTCTTTGG GCTTGCTCAC ATCTTTCCTA AAGAAGTACT CTACGAACAC
  ACAAACCAAG AGCTGCCACT CCATTGCTGG CCTCCTCTGG GCATCTCAGC CCCACCCTGC
  TGCAGCTTCG AGACCCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37544172	NES08896193	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27335727					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544172	NES08896193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157970338 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	823 bp distal
Rr568654	regulatory region 568654	within coordinates
Rr568655	regulatory region 568655	1382 bp proximal
Rr568656	regulatory region 568656	1591 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1230 bp upstream
Tssr27211	transcription start site region 27211	1108 bp upstream
Tssr27212	transcription start site region 27212	247 bp downstream
Tssr27213	transcription start site region 27213	991 bp downstream