rs27335736 SNP Detail

Summary

• ID
  rs27335736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157969051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATTAA AGGCATGCGC
  CACCACTGCC CAGCATGAGT TTCTTAAGCT ACAACATAAC CCTTGGGTCA CTGACACACA
  TAGGTTGCCA AGTGTAATGC ATACACAAGC TGGATAGGCT GGCACAACTA GGTGCTTATC
  TGTAAGGCTC CATTAAAGGC TCCGAGGGCA CAGGTACCTA CCCTCTGGGT ACTTGTAGGT
  R
  TGGGTGATGT CCTCCCGGTC ATCACGGCCC ACACTCTTAG TGCTGATCTT CTGCCCCACG
  ACCAAGGAAC GGTTGATGGA TTTGAGCACA GACCCATCTT CCTGCCGGAT CCAGTCCACC
  ACATCAGCGT TGACCTCGGC AAACACGAAG GGTGCATCAT ACTTGGTACT CAGGTCTCCC
  TCCTTGATGG CTCGCACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37544182	NES08896232	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27335736					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544182	NES08896232	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157969051 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	274 bp proximal
Rr568654	regulatory region 568654	588 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	46 bp downstream
Tssr27211	transcription start site region 27211	173 bp downstream
Tssr27212	transcription start site region 27212	1534 bp downstream