rs27335739 SNP Detail

Summary

• ID
  rs27335739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157968921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTTTTC TTTTTTCTTT
  TGGTTTTTTG AGACAGGGTT TCTCTGAGTA GCCCTGGCTG TCCTGGAACT CATTCTGTAG
  ACCAGGCTGG CCTCAAACTC AGAAATTCGC CTACTTCTGC CTCCCAAGTG CTGGGATTAA
  AGGCATGCGC CACCACTGCC CAGCATGAGT TTCTTAAGCT ACAACATAAC CCTTGGGTCA
  Y
  TGACACACAT AGGTTGCCAA GTGTAATGCA TACACAAGCT GGATAGGCTG GCACAACTAG
  GTGCTTATCT GTAAGGCTCC ATTAAAGGCT CCGAGGGCAC AGGTACCTAC CCTCTGGGTA
  CTTGTAGGTA TGGGTGATGT CCTCCCGGTC ATCACGGCCC ACACTCTTAG TGCTGATCTT
  CTGCCCCACG ACCAAGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37544185	NES08896226	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27335739					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37544185	NES08896226	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157968921 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	404 bp proximal
Rr568654	regulatory region 568654	718 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	176 bp downstream
Tssr27211	transcription start site region 27211	303 bp downstream
Tssr27212	transcription start site region 27212	1664 bp downstream