rs27336929 SNP Detail

Summary

• ID
  rs27336929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156189884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACTGCAT AGAGAGGCAT
  AGAAACCATG GAAGTGATCT CAGCTTCATT CTTCATCTCT TCCATTGTCA TCCTCATTCA
  AAAGCCAACT ACAGTAGAAA AAGCAATGCT AAAATGCAGA GGAATCTTCA TTCACTGCCG
  AATTTCTTCC CTTTTTTATG TGTATGTGAT AAAGACTGGT ACACAAAGAA GAACAGCAAT
  Y
  GGCAACTGAG GCACGGACTT CACTTCCCAC CTTTGGAGCC CTCTTCAACT CCCGGATCAA
  TTCACTCAGG CGACGCCGGA AGGACCCCTG TTTTTGTTTT TTCAAGACAG GGTTTCTCTG
  TGTAGCCCTG GTTGTCCTAG AACTCACTCT GTAGACCTGT ATGTATGTAT GTATGTATGT
  ATATATATAT ATATATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37550159	NES08891209	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27336929					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550159	NES08891209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156189884 () rs orientation: forward

Symbol	Name	Function Class
Cnbd2	cyclic nucleotide binding domain containing 2	within coordinates
Gm14253	predicted gene 14253	124 bp upstream
Tssr27051	transcription start site region 27051	7 bp downstream
Tssr27052	transcription start site region 27052	67 bp downstream