rs27336934 SNP Detail

Summary

• ID
  rs27336934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156189496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTACTGA TATTTTTTGA
  AGACATTATT CACTGTATCA AGTAGTTCTT TTATTGCACT AGCTATATCC TTGATTGTCT
  GCAGAAACCT CACTCTGTCA TTGATCTCAT CGGGAATCTT ACTGAGAATC TGTTTAAGTG
  CCCGTGCCTT TTCATTTAGG TCCTGGAATT CTGGCTCTGG CCGCTCAATC ATGTACTCTT
  Y
  TACGTCATCA GCTGCCATAC GAAGGAGGGA CTCAGTGAAG TTAACTTCTA CACTTTTTTT
  CTCTAATATT TTCATAATGA TGTCTTGTGT GAGGCCTGGA TTTTCCTTTT CAGCCTTAAT
  GAAAGCGGCT CTCAGAGTCT GAGCTGCAGA CAAATTTACT CGTTCTAGCT CATTAAACAC
  AGGATACATG ACTGCATAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37550164	NES08891204	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27336934					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550164	NES08891204	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156189496 () rs orientation: forward

Symbol	Name	Function Class
Cnbd2	cyclic nucleotide binding domain containing 2	within coordinates
Gm14253	predicted gene 14253	within coordinates
Tssr27051	transcription start site region 27051	395 bp downstream
Tssr27052	transcription start site region 27052	455 bp downstream