rs27336935 SNP Detail

Summary

• ID
  rs27336935
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156189234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTTATA CAGTCAAACT
  TTAAAATTTA CAGATAAATG CAGTTTAATA CTGCCACTGA GAAGTACATC TCTTAACATA
  TACAACTTTC AGGCCACAGT TTTGAAGGTC TGAAGTATCA AGTTGGTTTG ATGAATTAGC
  CGGTTGGCAC TTATGAACAC ATTTATTGCC TTGCCATCTT TAAAATAAGT CTTTAGAGTG
  W
  CACTGAAACT TTTGGAGTAT TTTACAAATT CTTTCTTTTG GTGTTCAAGT GCCCTGCGGT
  TCTGGTACTG ATATTTTTTG AAGACATTAT TCACTGTATC AAGTAGTTCT TTTATTGCAC
  TAGCTATATC CTTGATTGTC TGCAGAAACC TCACTCTGTC ATTGATCTCA TCGGGAATCT
  TACTGAGAAT CTGTTTAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37550165	NES08891203	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		T	T	T	T	T	T	T	T	A
ss45318243	mCV23225102	ABI	CRAMUS_MOUSE	f	SNP	A	A	T					T		T
ss148070376	ENSMUSSNP1198890	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27336935					SNP	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550165	NES08891203	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156189234 () rs orientation: forward

Symbol	Name	Function Class
Cnbd2	cyclic nucleotide binding domain containing 2	within coordinates
Gm14253	predicted gene 14253	within coordinates
Tssr27051	transcription start site region 27051	657 bp downstream
Tssr27052	transcription start site region 27052	717 bp downstream