rs27336938 SNP Detail

Summary

• ID
  rs27336938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156187993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATACATT CTTCTAGCCT
  CAGATGGCAA CTGAATTCAC ACACAAACAC ACACACACTC ACACACACAC ACCTTTGCAC
  AAGTGCATCT GTGTGCAATC AAAAAATAAT AAGTCTTTTA AAAAAATAAC TTTTTTTAAA
  GCATCCTTGG TTAATGTTCA TCTGCCACCC CAGGGCTTCT AAACAGGGCC CAGCCCAGCC
  R
  GCAGCCATAG TTGGGAGCTC ATGAGACACA AGTTCTGTCA GGTACAGTGG CCGCTCTATG
  TAATCCTACC ATCCGGAGGT AGACACAGGG GTTCAGCGTC ATCCTTAGCT ATCTAGGGAG
  TTGGGAGTCA TCGTTGGCTA TGAGACATGG CCTCAAAAAA CAAAACAAAA CAAAACAAAA
  CAAAACAAAA CAAAACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37550168	NES08891223	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27336938					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37550168	NES08891223	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156187993 () rs orientation: forward

Symbol	Name	Function Class
Cnbd2	cyclic nucleotide binding domain containing 2	within coordinates
Gm14253	predicted gene 14253	1129 bp downstream
Rr568246	regulatory region 568246	948 bp distal
Rr568247	regulatory region 568247	1201 bp distal
Tssr27051	transcription start site region 27051	1898 bp downstream
Tssr27052	transcription start site region 27052	1958 bp downstream